Welcome to R-DeeP
- Database for RNA-dependent Proteins -
Human Protein of Interest
Enter a protein name into the search field:
List of Human Proteins
Enter a list of proteins or genes into the search field:
Comparative table of mammalian RNA-binding protein resources
The studies were conducted in different mammalian cell lines ranging from mouse embryonic stem cells to HeLa or HuH7 cells.
Useful links
Caudron-Herger et al., R-DeeP: proteome-wide and quantitative identification of RNA-dependent proteins by density gradient ultracentrifugation. 2019, Molecular Cell 75, 1–16
Caudron-Herger et al., Identification, quantification and bioinformatic analysis of RNA-dependent proteins by RNase treatment and density gradient ultracentrifugation using R-DeeP. 2020, Nature Protocols 15, 1338–1370
The Diederichs Lab Homepage
The Kettenbach Lab Homepage
UniProt
String database
CORUM database
The Human Protein Atlas
to Cook et al. 2011
to Baltz et al. 2012
to Castello et al. 2012
to Kwon et al. 2013
to Ray et al. 2013
to Gerstberger et al. 2014
to Beckmann et al. 2015
to Castello et al. 2016
to Conrad et al. 2016
to He et al. 2016
to Hendrickson et al. 2016
to Sundararaman et al. 2016
to Brannan et al. 2016
to Mullari et al. 2017
to Bao et al. 2018
to Perez-Perri et al. 2018
to Trendel et al. 2018
Gene Ontology Consortium
Ensembl